well with heads, cams, and a ported intake manifold, you can make some decent power on a NA 4.6DOHC. around 400RWHP.
i would buy revised feb. 05 heads, port them, and throw the FR500 valvetrain package on there, along with a ported intake, and full exhaust.
only problem is it gets expensive.
the eaton is a good option, but on a 99, it turns it into a ticking time bomb. those rods in there are really weak, and do not like boost.
i would personally pull the motor apart, and spend that $$ in the bottom end. keep the stock crank, get some 03/04 cobra rods, they can be had used for about 300 or so. and go .020 over, and run some CP pistons, and you have yourself a GREAT bottom end. assemble it back with some ARP studs, and the stock heads, and all, and when you get the $$, its ready for a blower.